$_> git clone git://github.com/dictyBase/Modware-Loader.git

$_> cd Modware-Loader
$_> cpanm -n Dist::Zilla
$_> dzil authordeps | cpanm -n
$_> dzil listdeps | cpanm -n

$_> perl -Ilib bin/modware-export commands

modware-export <command>

Available commands:

                       commands: list the application's commands
                           help: display a command's help screen

            chado2alignmentgff3:  Export alignment from chado database in GFF3 format
            chado2canonicalgff3:  Export canonical gene models from chado database in GFF3 format
       chado2dictycanonicalgff3: Export GFF3 with canonical gene models of Dictyostelium discoideum
         chado2dictycuratedgff3: Export GFF3 with curated gene models of Dictyostelium discoideum
    chado2dictynoncanonicalgff3: Export GFF3 with sequencing center gene models of Dictyostelium discoideum
  chado2dictynoncanonicalv2gff3:  Export GFF3 with repredicted gene models of Dictyostelium discoideum
       chado2dictynoncodinggff3: Export GFF3 with non coding gene models of Dictyostelium discoideum
                    chado2fasta: Export fasta sequence file from chado database

$_> perl -Ilib bin/modware-export chado2canonicalgff3 help

modware-export chado2canonicalgff3 [-?chlopu] [long options...]
  --write_sequence            To write the fasta sequence(s) of
                              reference feature(s),  default is true
  -h -? --usage --help        Prints this usage information.
  --exclude_mitochondrial     Exclude mitochondrial genome,  default is
                              to include if it is present
  --only_mitochondrial        Output only mitochondrial genome if it is
                              present,  default is false
  -o --output                 Name of the output file,  if absent
                              writes to STDOUT
  --feature_name              Output feature name instead of sequence
                              id in the seq_id field,  default is off.
  --attr --attribute          Additional database attribute
  --rt --reference_type       The SO type of reference feature,
                              default is supercontig
  --reference_id              reference feature name/ID/accession
                              number. In this case,  only all of its
                              associated features will be dumped. Takes
                              precedence over dumping with
                              mitochondrial options
  --pass -p --password        database password
  --dsn                       database DSN
  --schema_debug              Output SQL statements that are executed,
                              default to false
  -u --user                   database user
  --log_level                 Log level of the logger,  default is error
  -l --logfile                Name of logfile,  default goes to STDERR
  --species                   Name of species
  --genus                     Name of the genus
  -c --configfile             yaml config file to specify all command
                             line options
  --org --organism            Common name of the organism whose genomic
                              features will be exported